Tools for working with genomic and high throughput sequencing data.
Group: FASTQ
Sorts a FASTQ file. Sorts the records in a FASTQ file based on the lexicographic ordering of their read names. Input and output files can be either uncompressed or gzip-compressed.
| Name | Flag | Type | Description | Required? | Max # of Values | Default Value(s) |
|---|---|---|---|---|---|---|
| input | i | PathToFastq | Input fastq file. | Required | 1 | |
| output | o | PathToFastq | Output fastq file. | Required | 1 | |
| max-records-in-ram | m | Int | Maximum records to keep in RAM at one time. | Optional | 1 | 500000 |