Tools for working with genomic and high throughput sequencing data.
Group: Basecalling
Extracts information about an Illumina sequencing run from the RunInfo.xml.
The output file will contain a header column and a single column containing the following rows:
run_barcode: the unique identifier for the sequencing run and flowcell, stored as <instrument-name>_<flowcell-barcode>.flowcell_barcode: the flowcell barcode.instrument_name: the instrument name.run_date: the date of the sequencing run.read_structure: the description of the logical structure of cycles within the sequencing run, including which cycles
correspond to sample barcodes, molecular barcodes, template bases, and bases that should be skipped.number_of_lanes: the number of lanes in the flowcell.| Name | Flag | Type | Description | Required? | Max # of Values | Default Value(s) |
|---|---|---|---|---|---|---|
| input | i | FilePath | The input RunInfo.xml typically found in the run folder. | Required | 1 | |
| output | o | FilePath | The output file. | Required | 1 |